PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_26258_BGI-A2_v1.0
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 370aa    MW: 42792.5 Da    PI: 6.3959
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_26258_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3986e-31118209187
                                 EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-E CS
                          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDf 79 
                                 f+kv tpsdv+k++rlv+pk++ae++    +++ e++  l +ed++g++W+++++y+++s++yv+tkGW++Fvk+++L +gD+
  Cotton_A_26258_BGI-A2_v1.0 118 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldSSSIEKGLLLNFEDRNGKTWRFRYSYWNSSQSYVMTKGWSRFVKEKKLVAGDT 200
                                 89***************************955556888********************************************* PP

                                 EEEEE-.SS CS
                          B3  80 vvFkld.gr 87 
                                 v F++  g+
  Cotton_A_26258_BGI-A2_v1.0 201 VSFQRGvGE 209
                                 ****54233 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.7E-40112220IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.46E-30115206IPR015300DNA-binding pseudobarrel domain
CDDcd100175.74E-27116217No hitNo description
PfamPF023622.5E-28118217IPR003340B3 DNA binding domain
PROSITE profilePS5086313.987118220IPR003340B3 DNA binding domain
SMARTSM010193.2E-22118214IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MMNFVEEEEE KGYYCNNEDQ EEDDEEVVMI REISSNNFPF SSPSSSSVSS KYKDAAAAAV  60
HLSLGTFDSR QDHNKTQQQS GFDFDKKQDL VMDLSLGNHK NNDHEESCYE SVEKEHMFDK  120
VVTPSDVGKL NRLVIPKQHA EKYFPLDSSS IEKGLLLNFE DRNGKTWRFR YSYWNSSQSY  180
VMTKGWSRFV KEKKLVAGDT VSFQRGVGES VKARLYIDWK LRPNALDPSP FAHIQLRNQF  240
NFLQPVRWEP ICISRNYQPL HRLNYSIYPY NHRHQHHFQH QHQQQAITYS NMSQYYQIGA  300
LQGEPMVIDS VPVIEANNNK TSAKRLRLFG VNMDCPNPTQ DESSSSIPLS NTQAEYSNKG  360
KSSLSIDLEL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A9e-4911522911125DNA-binding protein RAV1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6166620.0JX616662.1 Gossypium hirsutum clone NBRI_GE61480 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012437859.10.0PREDICTED: B3 domain-containing transcription factor NGA1-like
SwissprotO827999e-75NGA1_ARATH; B3 domain-containing transcription factor NGA1
TrEMBLA0A0D2PU430.0A0A0D2PU43_G
STRINGPOPTR_0002s18260.11e-114(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2484534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.12e-72B3 family protein